PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124701001
Common NameGSBRNA2T00124701001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 233aa    MW: 25493.3 Da    PI: 9.4926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124701001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.22.1e-41531521100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l
  GSBRNA2T00124701001  53 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAL 142
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++el ++++ 
  GSBRNA2T00124701001 143 QSELTAVRSA 152
                          ****999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6952153IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-4253150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKTKVLLGFV VLRERFELLR KIFKREADAW PHQMAGIRRP MSGPPGTLNT ITPCAACKLL  60
RRRCAQECPF SPYFSPHEPH KFASVHKVFG ASNVSKMLME VPESQRADAA NSLVYEANVR  120
LRDPVYGCMG AISALQQQVQ ALQSELTAVR SAILKYKQRE AVATLILPSN SQVAGFHNSS  180
GVSVIAPPPQ TPSTPPQPTV APPPPSSCVF SQPTTRALEY SDIENENNSY FG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124701001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4466130.0DQ446613.1 Arabidopsis thaliana clone pENTR221-At2g40470 LOB domain protein 15/lateral organ boundaries domain protein 15 (At2g40470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133436.11e-163PREDICTED: LOB domain-containing protein 15 isoform X1
RefseqXP_013734516.11e-163PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T51e-125LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A078F3M71e-172A0A078F3M7_BRANA; BnaA03g19070D protein
STRINGBra000188.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-122LOB domain-containing protein 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]